Scaffold Ga0209535_1039607

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1039607
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2122
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002594	Metagenome / Metatranscriptome	545	Y
F011527	Metagenome	290	Y
F024421	Metagenome	206	Y
F031263	Metagenome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10396073	F002594	N/A	MAKVPISRLNSAPEKYKANEFNQLIEDLQDMVKILNSTYPTDQANEQDRKEFFLSG
Ga0209535_10396074	F024421	GAG	MEKLNQKRNLEAKWASELIANGSVTVSMVNTSKEIKDLEREIKEDSEQK
Ga0209535_10396075	F011527	N/A	MLVYFQFRRCGYYANGLIEADDLESAGKALWAEHVKTFKWVEDNFFSQDLNTLTIEEYKYEPSSDGKTEPEKKSGGEMGL
Ga0209535_10396077	F031263	N/A	MKTVILYLIIILNNGDDYKLRKIISYEDLSCFDWYLKNIEFLDNNTNKYNGLYVAGYICEYEKGE