Scaffold Ga0209535_1037314

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1037314
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2214
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000302	Metagenome / Metatranscriptome	1337	Y
F014790	Metagenome / Metatranscriptome	260	Y
F037814	Metagenome / Metatranscriptome	167	N
F069051	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10373141	F000302	AGGAGG	MIGTMTQDTKDRIRELEGQKVILEDRLEHLGYARNLVRMHEIENEIYEIEDTIRKLLG
Ga0209535_10373142	F069051	N/A	MADDVDIFDNLVKEGYPRDHRWDRDKNAKLLNIVFAGGTFGNFLRYFLEKFSAKTPDIEKEPFTDNGTSHGLGNNDFSGLIQMYHQSFINDNQGEANLPVCMIMPSTGKHYLYLKKAQVFRPNDYRVSPDDLWRKAIGEMADQLKDHANNIVKLYDIKDPEHFTWLPKFIVRDWYKLEFLQPREETFNYRWFNTFKGHRLWQGQKVHHLDLETFFNWDTFVENITELNDVFDLALNFDRKAQMKEIFDKGLSLDSIRQECNLAEQVLDNNEDAGLDDLDVATEGYIYAEIEKANPDIQMPLTNRFFRNAEEIRQFIEHYPNWYRRPNPNIN
Ga0209535_10373143	F014790	AGGAG	MQKQIENKIEKFAKLTGLTERVTMSHGTLYALLLQPERCDFFHGVIRTFYKDNINPEGGVDMHPVGDEFAFDFVEGPKDNYHSEEKGVWSEFAEEELLNNIDEEDESPAFPSYNEIPDEVDVMLNLEADAKEGK
Ga0209535_10373144	F037814	AGGAGG	MEPTLAISIAMLLVIMFGCLYMLKVLGECKKIIKSMKRRSKKYMKEVVSND