Scaffold Ga0209535_1035675

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1035675
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2289
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004856	Metagenome / Metatranscriptome	421	Y
F011192	Metagenome / Metatranscriptome	294	Y
F031261	Metagenome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10356753	F011192	GGAGG	MTAKEMTDNNFINFQDDFYNLLEKYGVSSIDIEHQQFATICNLRDSVVEFIEQETWEEAWEEDDE
Ga0209535_10356754	F004856	AGGAGG	MSDWIEGTKPKIIKARYSAYLSWDLEELGIDWDEVEDWDLQRADLEITFKDGTKKNYENWQDLDIDYKHNFEEVLILDEDWEKVEGLN
Ga0209535_10356755	F031261	AGGAGG	MNRTKNYVMTVDKNSDNILEQLNKLQQVRQSVSLLNKHSTRKHYVKCQGRWGRNNPDYNRRMIPFCPLDKAVKWDVYIYQGGR