Scaffold Ga0209535_1033256

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1033256
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2401
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013576	Metagenome	270	Y
F020447	Metagenome	224	Y
F032037	Metagenome	181	N
F058444	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10332563	F058444	GGA	MTLEKLLKELNSIPKKHLKTDVRISVDDLINKGITENFWFTDVEIREKSSGLDQPEIIINGSE
Ga0209535_10332565	F013576	GGAG	MFDDIKKEIDDTLNHLNPFENISSDGYTGNNILPSHVKKFIADKKATQKEQELVDNYIDEIKLKKGEK
Ga0209535_10332566	F020447	N/A	MIKQIMIVSIMITFILFLGYLGIEYLISQLINDVFTANGE
Ga0209535_10332569	F032037	N/A	MWDYIQDDLTSVVFVSKKDQSVTIKIYGFDDEATAETFANYTMTLLNFDYDTTSYSMPSKMIH