Scaffold Ga0209535_1031864

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1031864
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2477
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003531	Metagenome	481	Y
F005656	Metagenome	394	Y
F008924	Metagenome	326	N
F014969	Metagenome	258	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10318643	F014969	AGTAG	MISNYPFGKKNDRPNYYYTQDVFGDGQGITGRIKKRKKKNVRIRKIKKVT
Ga0209535_10318646	F005656	AGGA	MILKDLLNLQQIVEKRAIPYDVLEFDSKHYSQSKDMTVDILDLHLTHAIRILNNYLTDDEYPRYSNRKEINDHLDVIKDNLDDIKEVVNK
Ga0209535_10318647	F003531	AGG	MKRKTWTENETELARQLLKTHSYATVGKMLHRSKNSVIGQFYREKVMNGYTPDPFSKYTRKKERNIFVDN
Ga0209535_10318649	F008924	GGAG	MKNVEEKDLYKEYRHAYDKATELEFFDKQQEADYYYEYAMQLKKKIDNGETTLY