Scaffold Ga0209535_1030791

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1030791
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2539
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium TMED56 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004220	Metagenome	448	Y
F018451	Metagenome	235	Y
F026714	Metagenome	197	N
F043088	Metagenome	157	N
F043623	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10307911	F018451	GAG	MAVNKYIDIQSHNKTLVPKDYKMNKIQHSPKVLEVKNGMLGFEFNGTYIVDPTLDETARFPVSAKTYYKISARDRDRMIKANIKV
Ga0209535_10307912	F043088	AGGAG	MKRLEGIYRGFSIFEKDNEWKIEIEGKSMGRFDKEEGVDGKASCMTEIDRIKRQDRVEVDANIQRVDAQVKLDNNIKKARNNGS
Ga0209535_10307913	F026714	AGGAG	MADKYKKLTIYVNEEQEKVLKDFDIMAIRKEQFPLLHYTVGIISKRLEETHNRMITDVDPNTCDTSTLHLNSQTIE
Ga0209535_10307916	F043623	AGG	MFKRIKKTEDDPSLKEAQAFVKGWVERVVLSTGTLLVDEEATFKRGIKKNKAASFLSTKDGYPEILGPAIFIPHEVKSEWS
Ga0209535_10307917	F004220	GGA	MVEKDKVDWCYYFKSIDRWIRVCTKDMNEGFSVFTKQTRVKEHYKKMADTGVEFYTCDDDDLDKEYGMYYGNLEFDPLDIMESNSGHTKMFHKENGKWQQL