Scaffold Ga0209535_1029658

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1029658
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2604
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC034P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005038	Metagenome / Metatranscriptome	414	Y
F013234	Metagenome	273	N
F023451	Metagenome	210	Y
F026711	Metagenome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_102965810	F023451	AGGAGG	MNKEKWINFKKPMLIGVDYDCKFNPLKDWQQALKLKIDDNVIGYDFKIVAYKK
Ga0209535_10296582	F013234	N/A	MANIKYNKTIEKTILNRLCNGESIRKICKDPEMVSWATFSQKLKDNEKLQDQYYTCKKIGIEMVIAEAQDKLMDSINTLENSGKMDNSLPFAHLIKEMQSNAKWLSSVLSPVRYGKDTKLTLNGGDKPIEIKWQQ
Ga0209535_10296586	F005038	AGGAGG	MKAKDINIYNLFSATYKKRNMFSFMGFGELSIMPKVKKPIRQISNVYQFPIHQYYNQRKRVK
Ga0209535_10296589	F026711	AGGAG	MSNRISQYDAQMIADWFNGSNLVHSSIADNKKIKKLFEQSEKLRQKAHRIIVNDNTWKFKWKSKNLRQLKVIYNHEKEG