Scaffold Ga0209535_1028272

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1028272
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2692
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: unclassified Hyphomonas → Hyphomonas sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000993	Metagenome / Metatranscriptome	811	Y
F004629	Metagenome	430	Y
F053631	Metagenome	141	Y
F089429	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10282723	F000993	AGGAGG	MKLHHSKYKENYKKYILSTIETDNNDKPLNKDQDKIKYIFDRFNSEYGFMVERVGKYKAMSEWLSGLALDIEYYYDDIVKLAIKMGSIDPNPNEKLRNKVEQGYFDFMANIILGFEPKESKXLEPYISHYALE
Ga0209535_10282724	F053631	AGGAG	MIRAIYFSLCFGIALFGLFVIIHINLTIGLSVFALFIVKFFLMLPQTMES
Ga0209535_10282725	F089429	GGAG	MKAKNLDIYSIFSRTYKKKMFSFMDFGEIARLKKFKTIKQVSNVYQFPIHQYYNQKRRVK
Ga0209535_10282728	F004629	N/A	MIPTRITVDELDNMFQTATYVERYLPSPSMKNKRTDMYNLIERLYGVGKDKDCYKDDDKPRLRIRLNSGQLQTYEFCILLLVKATEPQRDIIQLRNFPYRKSFRELKKFFLPSSHEKVRSDYYKALLDLSMVYNTKGYKYISK