Scaffold Ga0209535_1026107

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1026107
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2845
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004368	Metagenome / Metatranscriptome	441	Y
F006271	Metagenome / Metatranscriptome	377	Y
F054419	Metagenome / Metatranscriptome	140	N
F071648	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_102610711	F006271	N/A	MLIYGNTPRDIMKMMWRRRIKMLSIIVVIAVAVMLMGCTIGNKKISPPLTALDKFWDTLGSGKTKDLVEETK
Ga0209535_10261076	F071648	GGAGG	MKRTFACTVCGKKFVHNKSETLVGKLGIIPVNLCKTHFKAVMKHDELLLNDHRKVA
Ga0209535_10261078	F004368	AGGAGG	MTGTRLLDIVMDRNEDFLYEDSRAMKLTPYVMSERCIQAEVVKIFKDKEEGNHDTLTYILEGGFKGFHNMDSSELIEEYKQIEEQWYNLYECSELPFTPYEEDPIHKLEEEKI
Ga0209535_10261079	F054419	AGGAG	MSVGYGFGMLAVGMIAILIGAIIIYKIINKREEDNDD