NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1023265

Scaffold Ga0209535_1023265


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1023265 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3081
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001839Metagenome628Y
F004629Metagenome430Y
F004990Metagenome416Y
F008915Metagenome / Metatranscriptome326Y
F011253Metagenome293Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_10232653F008915N/AMGFIVDNEITLDLYEMQSASHLGILRCLESKKHKENWGYNYKGSLNDQMAKSISGAMGEVAASKFLGIKFEYHCNVGNVPDLIFKDLRLQVRTQIPKNNNSLIIRPKAKQDEFYILVIDEAPKFKILGFVNSTYVLGQEQWKTTFGLDRPFCYSIPPEKLTPINLLKDSTWN
Ga0209535_10232654F004990GGAMYGDPKKKCCACENTADFKEGNKYYCCDHYALYVLNKPMSQIEKELKE
Ga0209535_10232656F001839GAGMKYFEKIDKDLINNRALNSHEKLIYIICKSFENAPRGCRISHKYLMQRTGIKTQPTLIRCLDRLTLFGMLARKQIENGTCHYVFDKKTMQEYIQHNLNKRRKISLSKNRHNRNLNTALSFPNVINIGKVIK
Ga0209535_10232657F011253AGGMKDRKLELNNIIKDMAKNKSLPYANAITKIKKDRKGYFQAKDIKQKSKSLSTDRFQQYLKDIQENDTE
Ga0209535_10232658F004629AGGAMIPNRLTVDQLDNYFQTATYVERYMPSPLNMKNRRTEMFLMIDRQYGISSDKDTYKGQDKPRMKIRLNGEQLQVYEFCILLLVKASEKDRDIISLRNFPYKRSFRQLKQFFLPSSHEKVRSDYYKALEELKSLYNRKGYKFICK
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Biomedical Sciences Research Center "Alexander Fleming"
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