Scaffold Ga0209535_1021563

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1021563
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3244
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004322	Metagenome / Metatranscriptome	443	N
F025147	Metagenome	203	Y
F089521	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10215634	F089521	AGG	MKYIIINRWKLPGAKAHYYLKEVVEGLELANKKLDAYQTIENDKNDNYYIVPFDESVLVLNKQVA
Ga0209535_10215635	F004322	N/A	MSKSTYPTKYQLEHLKKRINSEIDPLIDQAQLSVKSIVADLTETAELKLAKKIKADVVIKELEDAIANLEIKQRKAQTFFGKIKDPDLKGQLNYKFDKNDNDSYYRSSYSKGIEPSDCRDQLREWAQYLAQKEAEKTPEGAKVKELKLYKQSAINSVFECGVPEQLNIVLEKVLNGVGIVWNKTKALQLENKGYN
Ga0209535_10215636	F025147	N/A	MSNKNNINKCPQPSYSCNSTDYNFKGKPKKDNSKKGDIFENCRSCGDYIKGDYRSNFDGRYCQDCL