Scaffold Ga0209535_1020205

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1020205
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3390
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044191	Metagenome / Metatranscriptome	155	Y
F082920	Metagenome	113	N
F089503	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10202054	F044191	GGAGG	MSIGIWQIIILALFIVILLGSGYLGIYIFKQNPKLKKYLTTKNVIIISLAYIVAVSFISGKNAAYGFGAIFTPYVIALINSLFRNRFKFKNTFDDKFYPFFIGLLSIAFISTTLQAIF
Ga0209535_10202055	F089503	AGG	MKTRGESLIESFIVIAILLAIYWVAGFIIFKLFKKEIRNEKGYLACIIGGFILKRGLISLMG
Ga0209535_10202057	F082920	N/A	MFSLFEGRKSKTKKRIIKALDVYIPGIDGLDPEEVGRMLDKAQFIKESSLILLDENDPAKAYWEDPMMIEESKALDRIDFWFKWMLGWSAEGAAGNEKVAAFSIYFYSLGTSIYPELRIRGKQMWKALSRGFKHCGSFDPKKDIPLGFEKFNK