Scaffold Ga0209535_1019713

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1019713
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3450
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002390	Metagenome	565	Y
F048911	Metagenome	147	N
F072846	Metagenome	121	N
F087881	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10197132	F072846	AGGAG	MSKTALTLFEVFAFKQINGQRACMKVLDVQAHTPDDAGKTGKSFSKMMSYEYSHVKEVR
Ga0209535_10197134	F048911	AGGAG	MNKPVNYDLWKQAKSTLENIEEELREARFHNDTESIEYFLKEKRDTHALITQLETKEETL
Ga0209535_10197135	F002390	GAG	MKHATQLFPIALQELIAIGEKARKQREKGERAKRGALPRETGACMHAACKEKQAKQLQLQLK
Ga0209535_10197138	F087881	N/A	MNNLIELTITFPESETQTMILGKGSEAYKQMIDYAEINEGVTSEKPHVNIIDHSKNHYLCDFRVADIVEIHTKQSLEAEYRGSNLYDITQGANEKDWNYKGEQITFSELMEKLDRPPNTYSEEARSYHGEIDHDYYIHEDGGMLIKRIW