Scaffold Ga0209535_1019137

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1019137
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3520
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013377	Metagenome	272	N
F021206	Metagenome	220	Y
F058518	Metagenome	135	Y
F081883	Metagenome	114	N
F087886	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10191371	F081883	GAGG	MTPRIEKIYNLIYYSDFDEYEIKQLAIGLLGTTLSDTSWHETADTVSSYKLSDEMELDFDGGDN
Ga0209535_10191372	F058518	AGG	MRFKEIVISADDLECDTNNTIAVAIKKHILDIGVATPTTLTGFNWRLDVRMRMDNDDT
Ga0209535_10191374	F087886	AGAAGG	MSNFRKIWKLDLMDWDNSENKFVDRYSTYHTSKKKAVERAKTYIELIKVDKLTSVNERTKNSTSVHSASGDILGYIHSERLL
Ga0209535_10191375	F021206	GGAG	MTVTLNQLLEMENVLATRKIPSDIASMTKAKRYSESKQKVIILGEQPLHYVLRILAKEGLEKXVTLEKSGN
Ga0209535_10191377	F013377	AGGA	MTRKILKHWALFYKHNERQFISAPSRQELDRAIFAGAYAPSPNNVTYYVEYERDIKDTQYNQVHEV