NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1018882

Scaffold Ga0209535_1018882


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1018882 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3553
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006892Metagenome362Y
F008915Metagenome / Metatranscriptome326Y
F058519Metagenome135N

Sequences

Protein IDFamilyRBSSequence
Ga0209535_10188822F006892GGAGGMSDTGIIIPLKERIRDLETINLAHQKKNGQLRQEIQDKDKLIKELQEKIKNPLNKMREQGEI
Ga0209535_10188823F058519N/AMANHLKIIGEAYQKFNDTNTSVSANKEPHSLRAFKRYKLNSEQRNKCTNASLTLGTLGHDISEKAIVKNLSVEECIADKEIQDKIKSYVTVDMKDQMKFEFGIKFLKDICQNHIENIKELPKQKWQTEIEHVKWIDPINVPFRMFIDLTGDTHINDLKNKFPTVKYAPLKTKQTKENPNRIGDWTCSHPKIDQRAFTSDLMQIALYSHTTGLKPSLSYASATDRILFTEKNCEDLQPENLKRNLQELIAYEIAWEKKLKAANGSVDELLWLNIPDFSEIRKGSFWWNSIPQEYMEDYLKTYV
Ga0209535_10188826F008915GGGGGMESNQVTLDLYEMQSAAHLGILRCLESKKHKENWGYNYKGSLNDQMAKSISGSFGEAAIAKFLKIKFTFTCNHGSDADLIFKDLHLQVRTQLPKNNNSLIIRPKAKPNEFYILVIDEAPNFKILGFVNSTYVLGQEQWKTTFGLDRPFCYSIPPEKLTPINLLKDSTWN

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