Scaffold Ga0209535_1018857

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1018857
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3556
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM24-C165 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008386	Metagenome	334	Y
F050002	Metagenome	146	Y
F053565	Metagenome	141	Y
F075988	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10188573	F050002	N/A	MADYYVKTIHSDLNNFDMYLQEHFERVFYDDDSDIKACIRDMKYVSKRLKKLDRIEKVLGINN
Ga0209535_10188574	F053565	GAG	MMKNYKDTYQNTLIASGKNNLKELARLTLLNILSVQGVIYTHYKNKQLNKKQGVQNGRLL
Ga0209535_10188575	F008386	AGG	MSSEKQLILIILVGFVILIYQYYKDEKKKHDEKLQRHLSKYFDSKW
Ga0209535_10188579	F075988	AGG	MMKNKLSQWLIDYVKKKNGVDLTNVPSDKSWTELNPFRDSTMLSDKVIEFINEKNLSGIKSSMDLVEEQSDKATKEQRELNTINKGDK