Scaffold Ga0209535_1017040

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1017040
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3799
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008346	Metagenome	335	Y
F013639	Metagenome / Metatranscriptome	269	Y
F101490	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10170403	F101490	N/A	MIPMKNYLQETLEKQLKDFRSYETSIEREWGGKKRLFKCVDAQLEIKFCKAQMLFDESLIESSPKKKIEMIEMMLRAYTALVDKAADNGYSKLEDDFRCYKYRDNKIAIVCDTDTQIPRLKELYGTDKDVVLFSVEELFRFMHPNYLSAKETFKKKNLDIMFKRVSFT
Ga0209535_10170405	F008346	AGGAG	MPMKLKASQKIRDRATGKTTTEHYYLKSMTIKDLNDYIESSSAKKKVIQKCRNELTKRRK
Ga0209535_10170408	F013639	N/A	MKINKDKLKEKIKQGKSSHDIAMSYDVHPSTVRRKAKELGLKFETQTWWRKK