Scaffold Ga0209535_1016042

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1016042
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3954
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004629	Metagenome	430	Y
F005038	Metagenome / Metatranscriptome	414	Y
F011253	Metagenome	293	Y
F015660	Metagenome	253	N
F053631	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10160421	F015660	N/A	MANKTKYSKELIDSIMKDLAEGISIKASLKNHSISWECFRKWLLDEKKYPSLRGKYTQAKQDGIEYSLSDAQSLINEAVQDSKFKEKTDLGSTHLIKEFISLAKWRAEKLAPKVYGKNDNLKVSGDSNSPLIVKWNG
Ga0209535_101604210	F004629	AGGAGG	MIPSKLTVDQLDNYFQTATYVERYMPSPLNMKNRRTEMFSLIDRLYGIGKDKDSYKGEDKPRMRIRLNGEQLQVYEFCILLLVKASEKDRDIISLRNFPYKRSFRQLKQFFLPSSHEKVRSDYYKALEELKSLYNSKGYKFICK
Ga0209535_101604211	F011253	AGG	MNNRKSEIDKIIKDMVKNKSLPYANAITKIKKDRKGYFQAKDIKQKSKSLSTDRFQQYLKTIQEEDDTQ
Ga0209535_10160425	F053631	AGGAGG	MIRSIYFALCFGLALFGLLVVTHISIPIGLSMFFIFIIKFLLMLPQHQEE
Ga0209535_10160426	F005038	AGGAGG	MKAKDINIYNIFSATYKRKIFSFIGFGELSLMPKVKKPIRQISNVYKFPINRTTTKKRELNNEKYRKI