Scaffold Ga0209535_1015978

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1015978
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3964
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006845	Metagenome / Metatranscriptome	363	Y
F012117	Metagenome / Metatranscriptome	283	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10159783	F012117	GGAG	MDILGGMNNTNEGQQVYLAFKTADQKFFVNGETPIEFQYLQLDPATFRSGWGAYRAATGFDFHWDDKFGVVDDKPDDDYKRAFSAWVLPQGHPHPLLWQRFTYAESSAFNSILGTFWNEKDAHPNQMPVVKYVGSKAIQVGMGKSSELTFEFAKFAERANEFILPAWADNDGTIKKDQDTGNSSVSEEDIPF
Ga0209535_10159784	F006845	GAG	MDTNSFLYEEDFENFCRESYEKICIACNVLGIVNDEDYYSFKERCYLRLEADYMNSIDKTIH