Scaffold Ga0209535_1015925

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1015925
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3973
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007826	Metagenome	344	Y
F012166	Metagenome	283	Y
F015027	Metagenome / Metatranscriptome	258	Y
F030601	Metagenome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_101592510	F012166	GAG	MADLVNSGVFLERKLTPEEKLWKAVLSQGVYEACSKKYNALPLTYGEMRSALEWISLSNKDFCVVCQFAGYDPTYILRKAKDKVNKWLPNGA
Ga0209535_101592513	F015027	AGGAG	MQDKLYEATSREVMSEHEEYVNADVPKQVWVDRNKYLHEHVNKLTDEIIELRKDNKRLTKELNDKEEHVNFLRRSGAI
Ga0209535_101592514	F007826	AGGAGG	MNKETAFTFKLLNLIKKCREKGKFQLAIKLIDKYKINREKLAEDYYD
Ga0209535_101592515	F030601	GGA	MYTPGIKDGATERKELDTNVIELIKKILRLKTIHRDRGTYSATGDSLDLSDNGQPSDDSRRPLGENTVRGGVSQDDKPKQPIFVNEDPEYCKH