NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1015925

Scaffold Ga0209535_1015925


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1015925 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3973
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007826Metagenome344Y
F012166Metagenome283Y
F015027Metagenome / Metatranscriptome258Y
F030601Metagenome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_101592510F012166GAGMADLVNSGVFLERKLTPEEKLWKAVLSQGVYEACSKKYNALPLTYGEMRSALEWISLSNKDFCVVCQFAGYDPTYILRKAKDKVNKWLPNGA
Ga0209535_101592513F015027AGGAGMQDKLYEATSREVMSEHEEYVNADVPKQVWVDRNKYLHEHVNKLTDEIIELRKDNKRLTKELNDKEEHVNFLRRSGAI
Ga0209535_101592514F007826AGGAGGMNKETAFTFKLLNLIKKCREKGKFQLAIKLIDKYKINREKLAEDYYD
Ga0209535_101592515F030601GGAMYTPGIKDGATERKELDTNVIELIKKILRLKTIHRDRGTYSATGDSLDLSDNGQPSDDSRRPLGENTVRGGVSQDDKPKQPIFVNEDPEYCKH

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