Scaffold Ga0209535_1015839

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1015839
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3987
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004990	Metagenome	416	Y
F006892	Metagenome	362	Y
F008915	Metagenome / Metatranscriptome	326	Y
F026438	Metagenome	198	N
F046315	Metagenome	151	Y
F079202	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10158391	F079202	AGGA	LKYFEKIDKDLLNNRALNSHEKLIYIICKSFENAPNKCRISH
Ga0209535_10158393	F004990	GGA	MYGDRKKKCCSCQNGADLKEGNKYYCCDHYAINILGKTMEQIEKELGKNNEKIGSS
Ga0209535_10158394	F008915	AGG	MENNSITLDLYEMQSAAHLGILRCLESEKYQEKWGYNYKGSLNDQMAKSISGAMGEVALAKFLKIKFEYHCNVGGVPDLIFKDLRLQIRTQIPKNNNSLIIRPKAKPNEFYILVIDEAPDFKILGFVNSTYVLGQDRFKTDFGLARPPCYSVPPEKLTPINLLKDSSWN
Ga0209535_10158396	F046315	N/A	MNNLMNKKLIEYSLKSGYNSSFIKDYMKRNNLLPKEFTFRKESLDLILKKYNKKIIDFVRDTYSPKEQKNKLAQISKILNPKKNAPHYYTVNDLAFDLSTWSNNFSDADVVISPQFFMGENVQIDCIGELFGNGQIGIHKLKDRHKINIHPKYASFQAIECQTEHKRGLMMLFQPTKFIDRNANNRSAICQDKKTKVVWFGFLEPQSNGKYNILDKSQSTGKTIGKLAENIQLSWSAEIKAAYYPNIYNI
Ga0209535_10158397	F026438	N/A	MANHINVIGDSYTKFGLKHTSKSTACLPHTIRFFKKHILTPKENSEISNASFIGGTLIHMIVQESLTKKLSLDEVIKSELIQTKIDNYEPNDEKDKKKFEFIVKAAKETAQNHLDNIAELDNQDWQDEIEQVLWTPPVNTYWLMYIDLVGQDLFGDLKNKFGTVSLTKTKGYTYTNVKCPDRPFYSDVQQISLYQKSLGLKPFLSYASNCDRKLFTQENCEDLKQENLDKALKELMIYEIAWEKKLELADGDLDKLAWLCCPDFSDIKKKSFWWTGVAQEQINRLLKHYE
Ga0209535_10158398	F006892	AGG	MSDMGIIKPLRERVRDLENINEEHRKKNGQLRQEIQDKDKIIKELTEKINNPTKRMREQGEI