Scaffold Ga0209535_1015746

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1015746
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4005
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033251	Metagenome	178	N
F067196	Metagenome	126	N
F069345	Metagenome / Metatranscriptome	124	N
F082525	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10157465	F082525	GAGG	MEYKINSGIPIPDVVLGKKRGRGKWQVLLSSMSEGDCVDIPSGSYNSIYVAASRLGITLMSRREADGLADGFVRIWRVSNG
Ga0209535_10157467	F069345	GGA	MFHLSLSCGVFQMMIDCPECSHSDRKGEVEHEQFDMTSYGVYEPFGVWKTCENCFGSGEIEAD
Ga0209535_10157468	F033251	GAGG	MNVMADKKKRKLTPTKRAMKPWTGKEIDQLLEYKATGFRHSEIGELMGRSTKSINVKISKIRQGVDAANNPVEDLTPFQKNLDSTLFGDVSPDKPKKPRKPRATKLSLSPKPLVTDTFNVPKKPVYAAAVLVLVIVAWYLGSMS
Ga0209535_10157469	F067196	GAGG	MPEFNNIEEFFHDAMRKLDKGLPKEASPDLIKFFVLHVITAYDHDDCWDDVKGFIDFALKEKNQFDSARQAVEDADNMLDAITNNKDR