Scaffold Ga0209535_1014789

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1014789
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4178
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: unclassified Hyphomonas → Hyphomonas sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001839	Metagenome	628	Y
F004629	Metagenome	430	Y
F005038	Metagenome / Metatranscriptome	414	Y
F011253	Metagenome	293	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_101478910	F011253	AGGGGG	MKDRKLEINNIIKNFVKNKSIPYANAITKIKKDRKGYYQQKDIKLKSKSLSTDRFQQYLKTIQEEDDTN
Ga0209535_101478911	F001839	N/A	KYFEKIDKDLLNNRALNSHEKLIYIICKSFENAPNKCRISHKYLMIRTGIKTKATLIRYLDRLTLFGLLARKQIDNGTCHYVFDKPTMQEYILHNTNKRRKISLSKNRHNRNLNAALSSPNVINIGKVIKXLYNFGGIKNLNWRYRKRYLI
Ga0209535_10147894	F005038	AGGAGG	MKAKDINIYNIFAATYKKRKMFSFMGFGELSIMPKVDKPIRQVSNVYQFPIHQYYNQKRRVK
Ga0209535_10147899	F004629	AGGAGG	MIPTKLTLEELDNYFQTATYVERYMPSPLNMKNKRTEMFTLIDRLYGIGKDKDSYKGEDKPRMKIRLNGQQLQIYEFCILLMVKGSEKDRDIIGLRHFPFKRSFRELRKFFMPDSHEKVRQAYYKALLELLKIYNKHGYKYICK