Scaffold Ga0209535_1014630

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1014630
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4210
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (94.44%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010471	Metagenome	303	Y
F013377	Metagenome	272	N
F058518	Metagenome	135	Y
F062259	Metagenome	131	N
F081883	Metagenome	114	N
F096197	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10146301	F062259	GGA	MKNEKELDNEVREAFDRAVDSIMFDYMYMGTEKGDNLEYMMFKHIETREYIKIPKCGVAFKKRKEIV
Ga0209535_101463010	F010471	AGGA	MQLTLAINTNAYPEYNKRQLNEMLGLLPLWVAEHVGNDDNTDIVQFMTDRYGFGKLYKFDGKINKKGDYVSNYDDDADMPYIGKMITKDGYAYFYDCAIVALPQPDGKYFITRMD
Ga0209535_101463015	F013377	GAGG	MTKKILKHWALFYKHNERQFISAPSKEELDKAIFGGAYAPSPNSVTYYVEYERDIKDTQYNQVHEV
Ga0209535_10146306	F081883	GAGG	MTPRIEKIYNLIYYSDFDEYEIKQLAIGLLGTTLNDASWHQTADTVSSYKLDDERELDFDGEDNLR
Ga0209535_10146307	F058518	GAGG	MRFKEIVISADDLECDETDTIHKAIKKHILDVGIATRKTLTGFNWRLDVRMRMDNDDT
Ga0209535_10146308	F096197	AGGA	MTNFTKEQLKVLREAMQKTMNKANDLLEQKVIFNVDSCTYRGGEATFKVKVLLDGAETKEEKDLKKMAILSRLDTSKVHDYHDHRSVRYRMQLVGYKTKAKKMPWIVEDRLSGKEYKLTDTQARQWFEYEVQS