Scaffold Ga0209535_1013328

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1013328
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4480
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002594	Metagenome / Metatranscriptome	545	Y
F004220	Metagenome	448	Y
F011527	Metagenome	290	Y
F024421	Metagenome	206	Y
F031263	Metagenome	183	Y
F043623	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_101332813	F031263	N/A	MKTVILYLIIILNNGNDYELRRIISYGEVSCFDWYEKNIKFKDNRTNKYKDLYVQGYICQYEKGE
Ga0209535_10133282	F043623	AGG	MFKRIKKSEDNPTLEQAQKFVKGWVERVVLSTGVLLVDEEATFKRGIKKNKAASFLSTKDGYPEILGPAIFIPHEVKSEWY
Ga0209535_10133283	F004220	GGA	MVEKDKLDWCYYFKSIKSWIRVCSKDMNEGFSVFTKQTIVKEHYKKIADEGVEFYTCDDDDLDKEYGMYYGNLEFDPLDIMESNSGHTKMFHKENGKWQQL
Ga0209535_10133287	F002594	N/A	MAKVPISRLNSAPEKYEQNDFNQLIEDLQDMVKILNSTYPKDQNDEQDRKEFFLSG
Ga0209535_10133288	F024421	GAG	MEKLNQKRSLEAKWASELIANGSVTVSMVNTSKEIKDIEREIKEDSEKK
Ga0209535_10133289	F011527	N/A	MLVYFQFRRCGYYANGLIEADNLDSAGKALWIEHVKTFNWVKDTFLSEETNTLTIEEYKYEPSSDGKTEPEKKPRGEVGL