Scaffold Ga0209535_1012673

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1012673
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4627
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM24-C165 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008386	Metagenome	334	Y
F008877	Metagenome	326	Y
F046072	Metagenome	152	Y
F053565	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_101267312	F046072	N/A	MKQKYDPHIRVRFDLFDDPQFRTIPNKHKAHCLCVLICLLKFVNNKTLQCYPRKATISSMTGLSYTTIYRATIWLIRAKIVSKKRLPSTLLYTINPRYIVGYRESVPTAHTSVPTDRSDRSGRSLLIEHNINLSNITNLIKEVADKGGDQSKIVRVLSNLPRKTLIKAIEDNDNIYYSKLALAEQDRNGVKLVDIPRSIVDNVRKKTHFGYQNVIHKRKDKIARQTKTESFLSELNKKKH
Ga0209535_10126736	F008877	N/A	MKAKYFVSVLKILKDKYNFNFNINDTMQQAQDKIDELNTFKDIPTTNGSHLAANVVDFLKERDQKKRGDK
Ga0209535_10126738	F008386	GAGG	MSSDKQLILIILAAVVVFAYQYYKDEKKKHDEKLQRHLSKYFDSKW
Ga0209535_10126739	F053565	GAG	MMKNYKDTYQNTLIASGNKNLKELARLTLLNILSVQGVIYTHYKNKQLKGKYENKLRRKI