Scaffold Ga0209535_1012438

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1012438
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4685
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019668	Metagenome	228	N
F021557	Metagenome	218	N
F054939	Metagenome	139	Y
F064806	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10124384	F064806	GAG	MFKFIFGVIIGFMMFKFNWIDDMSNLINDYGIKDAIIEKLQDEVDIDNLNNGGEIE
Ga0209535_10124385	F021557	GAGG	MRTILCALLLTSNAIACDYKSDDEVKFEGYIESVRLIDKKVYPYVDDTRICTMHIESRIEGEWYPSKSKYIFGSEMSEDTACSLAENRAKVKVMREKLPEKLTSKRNLSCDLTTVRNSCKIIYMNVEMPMVGTQRVKLKTCEE
Ga0209535_10124386	F054939	AGG	MNIYLHTFLALGCIYGAYWYGRNMTRMTIAADAARNTLDRLEREGFIKYKFNKKTGEKEFKRFP
Ga0209535_10124389	F019668	N/A	MIDNKQTNEVDMSKQTIDYVGISGSKGSSFGFYFSTLENKEIVYTKTYLLKDLVNDLRTKYTLPDSYMASSSMDFATEEGFYHNGAASQVLSLASRIADSGKSIYEYTDKVLDEQTDIRNIEFGGLNKDEAEDWYTDGKVAFDN