Scaffold Ga0209535_1012344

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1012344
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4711
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009521	Metagenome / Metatranscriptome	316	Y
F037256	Metagenome	168	Y
F056177	Metagenome	138	Y
F099546	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_101234414	F099546	N/A	LKRQIDKGKSLNEVVMAMSKSKSTILKKANEMGLKFKNKTHWDNL
Ga0209535_10123443	F009521	GAGG	MKYQIIINNGTLKGFLAFRGSCLATMQDKYNRLHNQGHQLKLIRGE
Ga0209535_10123444	F056177	AGG	MKTITKEYTVYDFEDLKQDDELCEMIYQKFWIDNPNNINPWADENLDSFKLFANTLNMKFDYSLSNGEYQDRQCYIKLIPDYYLDNKDYKELLKDYTGNGYCFCDELQAFTLKLLDKKEYKVLCEWSTNDFAEEIHNKMFDMWFRDNQDYFSKESFLNHVESNEWEFNEYGRLI
Ga0209535_10123445	F037256	AGGAG	MNNKKEYIFSNTLTITEETEVLANSYDEAVDIFLSGGGTTDEVDSSGGNWECIQEPIDDEEQE