Scaffold Ga0209535_1010947

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1010947
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5103
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sneathiellales → Sneathiellaceae → Sneathiella → unclassified Sneathiella → Sneathiella sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018623	Metagenome	234	Y
F040869	Metagenome	161	N
F048634	Metagenome	148	N
F055195	Metagenome	139	Y
F066135	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_101094710	F066135	AGG	MNGLTLHRIESVRVKRENFSSFTTITVTVTDKTDKDFELTLFGDKGFTPNMEVQDDND
Ga0209535_101094715	F018623	AGG	MKTYRVSWQKGRRAGAQGIFYPDSVVVQAENERAAHLKAYDTHDHLLFVTVTEMD
Ga0209535_101094717	F055195	GGAGG	MTNRITKTTLQNQLDRLNAKLHEVSHMELDFYRHASPLGSYRLIYYKGLHPATPRMTGKEMHQYLNGALDWVTSDK
Ga0209535_10109472	F048634	GGA	MKCPHYSKDIRSGVVTELEAIEETLEVLSQLQLNGLVKLEDSDKVSQCIQHLYTIRFNLKMKENQNV
Ga0209535_10109474	F040869	AGGAG	MTVFDQVYNELTLLQQEDKDDLEIAEQALNAAMIFTMTNAPSNMNGIMLISHTFHGIITEFTLKEIEMGKEI