Scaffold Ga0209535_1010481

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209535_1010481

Scaffold Ga0209535_1010481

Overview

Basic Information
Taxon OID	3300025120 Open in IMG/M
Scaffold ID	Ga0209535_1010481 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5239
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	48.9699	Long. (^o)	-130.6666	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006347	Metagenome / Metatranscriptome	375	Y
F026404	Metagenome	198	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10104812	F006347	AGGAGG	MVDRIEQLITTLEQEINDGYNTMVGENDESLTYINSAQATLYELQKQVTELKQGLEQGKNFSLLGEDN
Ga0209535_10104813	F026404	N/A	MVIYGKTLEITDVTEGYTKEQVEQNIEKFTDKRNDALYNLYENKRETLAFNEGGNKYGYENLLDDTDFFTPEDFTDTYNVKGFTDEQVVKILGGLIQW

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