NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1010375

Scaffold Ga0209535_1010375


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1010375 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5273
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (26.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002390Metagenome565Y
F008400Metagenome334Y
F020911Metagenome221N

Sequences

Protein IDFamilyRBSSequence
Ga0209535_101037513F020911AGGAGGMSEEEKEEGKSYTTSFRLNESANARLMLFCELTGMRKSEVVKAAISQFIAPTIQNANVIPPYYNPRAHTCVDNNIISNDIMKNNTEAKIKDAKKEQTHAWFQAFWEVCKNQQFARRVVKTIRHNWDALAELDPKIVADKYNEHFSLKGNYAKHPNSWLNDGGYDNVVDNSVSTHGLNFDVTMKHPDD
Ga0209535_10103757F002390N/AMKQASEIFPEALKQLLEIGEKARKQREQRELAKHVARPRETRACMHGARKEKQLKLKLQTRI
Ga0209535_10103759F008400N/AMSKQDDSLLPKLAMGMTLFLALKLVPKLLAWWAKRNKKQGEIL

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