Scaffold Ga0209535_1009832

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1009832
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5457
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002602	Metagenome / Metatranscriptome	544	Y
F037934	Metagenome	167	Y
F041486	Metagenome / Metatranscriptome	160	Y
F096209	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10098321	F037934	N/A	PDEDRITIRPLDTERIMEQHGGRLNVYIIDYEHIKFRRKKDAVIFGLRYF
Ga0209535_100983211	F041486	GGA	MIISSIFGFILTVVGVNETAVVGYKILTTANNIQEKKEQKLLKASLHEEAQQILKDVIKEAGE
Ga0209535_100983213	F096209	N/A	IMTIAIQTKSVQEIFEEMTESYTLGEYLDGHTNYGEDALMSADKFADRFQHICFGFGYREAEIIPQKHEIREWCQEHLDKLESKFR
Ga0209535_10098322	F002602	AGG	MKNADQIKALAVSIEEKDNQIRMLMAQQGNHEVQIAEYRQIVKELSDKLKLYESKYGTVFKSSRNISTQK