Scaffold Ga0209535_1009744

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1009744
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5484
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016292	Metagenome	248	Y
F017045	Metagenome / Metatranscriptome	243	Y
F030882	Metagenome	184	N
F072753	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100974411	F072753	AGGA	MKDSKNIYLSKIKYDVLKYISTFIKQHRYSPTYKEIAVKFKFSRARAGAIVAELFKLNLISKGGSAHRKIRLTDTQTDSIPTLLYNKEYSAMDLR
Ga0209535_100974413	F017045	GGA	MAKSNSLIRRYAKLQKLHSEIMQKPKNNARQCVHSLKAFKSYIKTYRQIIGVENGDATFIYTQL
Ga0209535_10097446	F016292	N/A	MDNRIRKIGKCYTQFNLKHSSKSQNTIPDDIRFRNYIVMSPKEKMNMPKNCSFEGGTMEHELVQMHYTENKTLEEAKASEIIQDRINNYSPVDEKDKIKFEHIVERLIPVAQNHLDNIGELPKQKWKAELEYTHWDDRIQTYFLSYVDLIGETHFGDIKNVFGTLIKTKSGYSYTKKKCPVVPFHSDCLQIALYQKLLPKLKPFLTYASCSDKRIFTPENCTELRPESLEHYYDELVLYQRCWEKKLELADGNIETLALLCKPDFSELRKNSFWWKGTDPAVVKRFKGYYGF
Ga0209535_10097447	F030882	AGG	MDFKSLIDHYATLPKSELIEKLVFKNAKLLNQDNVIEKLEDEVKRIEEVDKGHQKLNGEYLEKINQLEKQKVILQKAIRKPGENNE