Scaffold Ga0209535

Basic Information
Taxon OID	3300025120 Open in IMG/M
Scaffold ID	Ga0209535_1008330 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025120 Open in IMG/M

Scaffold ID

Ga0209535_1008330 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6053
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (95.00%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (100.00%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

6053

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (95.00%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	48.9699	Long. (^o)	-130.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

48.9699

Long. (^o)

-130.6666

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002430	Metagenome / Metatranscriptome	560	Y
F003073	Metagenome / Metatranscriptome	509	Y
F007346	Metagenome / Metatranscriptome	353	Y
F007621	Metagenome / Metatranscriptome	348	Y
F012403	Metagenome / Metatranscriptome	281	Y
F017755	Metagenome / Metatranscriptome	239	Y
F031294	Metagenome	183	N
F035971	Metagenome / Metatranscriptome	171	N
F037204	Metagenome	168	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100833011	F035971	AGGAG	MGNLTWNEVAQIETDKRYMDMYGLSQLDMEDMLHEDMPCMLAMSILSDAQHVMSYDQEQARQFINRAKYVIRHIKSNIGLETTPTINAQQTN
Ga0209535_100833013	F012403	GGAG	MRIKPINPVAKAVAQSRRRASVVPDKTKYNRKKDKQDANQAGKHEKPKDN
Ga0209535_100833014	F037204	AGGAG	MDVKIYKDLSMYDFAMDVYQKAMHMKHDQNVEHYDVQEIIDYLQFIHNTEKGNAD
Ga0209535_100833018	F017755	GGAG	MAKRGAIIDMGRHKAVGSSWKAMDTLAFSRSYEPETRPDFRVYVTGQADAMLDTYCKEKDKADALAILDSLL
Ga0209535_100833019	F031294	AGGAG	MKFEMLDLFLIAMLMVGVFFGLAMLSLHGIGYMTWLSWTMFGCSAWCLICGWGIVAYNLENRNG
Ga0209535_10083302	F003073	AGGAG	MAKKLENMTQDERIAYWAAQREKERIQRRDRIAKLSLDQRVAVIKVYQLVDEILDTALYPDMGGIKAITAYDLQELSDAKDRLRHEFNFDVREHG
Ga0209535_100833020	F007621	GAGG	MENSISKSLVVVNNTLEAEGFALAKEWKSITRGDKSRFTKATKADGFDTRLGKLMQKLKAEGGERISSDRLKDCGINGIDKRRRSEALWFVENETACRDFIQASKKGFTSLTALQAAMKPKAAPKPKADTETPVEPEADDKSNVGLDSEADKVDKSPSDIALDALVQCEMNGIAIKDFMIALKEQLEMLDEDKVAA
Ga0209535_10083303	F007346	AGGAGG	MDENVIRGIRLSQAVKWQGQDIFEVASAAFEDANYHSFNEVFTAAWNEFQKELQDG
Ga0209535_10083304	F002430	AGGAG	MTFSLPKKQVNAILVALDTEIQYQFDSGGKPDWEYYPEMAAMMMAYYTTRCKFEEDDCNG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209535_1008330

Overview

Ecosystem & Geography

Associated Families

Sequences