Scaffold Ga0209535_1007970

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1007970
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6218
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002281	Metagenome / Metatranscriptome	575	Y
F005373	Metagenome	403	N
F010573	Metagenome	302	Y
F020817	Metagenome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100797013	F020817	AGGA	MIYLILKERHYESIENSYDIVESSNDIDKINDKLRGHQLINDNKDVSYSIVRYESPLLLTEEVA
Ga0209535_100797016	F002281	AGAAGG	MKFNYPKIAEHLGVPLRGNETFDELLKIEQQVKEHKERQERIAEQNANIQRVDAQTKKYWGK
Ga0209535_10079707	F005373	AGG	MNEGLENIKQIDDLENKVKTLSHHLANMCCQADEDTPSEYRTEHFRSTMDDAYEYLEKINYFKRGK
Ga0209535_10079708	F010573	AGGGGG	VSGFVQDWKCSKCKSNNACYEDFKDSEEGYIFECKDCKYMEVYREDVDTGKVVEDYAGYEHYYNNEQAKG