Scaffold Ga0209535

Basic Information
Taxon OID	3300025120 Open in IMG/M
Scaffold ID	Ga0209535_1007917 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025120 Open in IMG/M

Scaffold ID

Ga0209535_1007917 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6241
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (85.71%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6241

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (85.71%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	48.9699	Long. (^o)	-130.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

48.9699

Long. (^o)

-130.6666

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001839	Metagenome	628	Y
F021402	Metagenome	219	N
F033599	Metagenome / Metatranscriptome	177	Y
F050679	Metagenome / Metatranscriptome	145	N
F077486	Metagenome / Metatranscriptome	117	N
F090862	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100791710	F021402	AGGAG	MITTNLTIDELDRFLQISSFCDSKMPNVKAKSLPTMFKVIDNTIGIGDDKDSIKYSDKHLARLKITLTSRQITIYDFIAILMLDATEKDRELLYLRNFPQRKSLRQMKRMYLDWSHTKIGYEYNKALIAVCRIANKNLKKYFTS
Ga0209535_100791711	F077486	GAG	MLNQLDSLLTESERNNMLRNNKILTNPVSMFKIDIVKVFKKKETLKDIFKCKKLQKKHKLQDFKPI
Ga0209535_100791712	F050679	N/A	MANKTKKNNKVLQEIYEELATGASIRSCLSPRNKKEDRPCWQSFRTWMAKDQEIRKNYEQAKTDGIEYLLSDATDTINQALEDSKFKEKTDLGQTHLIKSFIDLTKWKSERLAPKSYLKKDTLQLLGSDSSPLVVKWDK
Ga0209535_100791714	F033599	GAG	MYEFGDKKLGYTAIVYVMESTNSVIVHFDGFNNLKECDKFSHQIMDDLGIEPLFKPQDITLH
Ga0209535_10079178	F001839	AGGAG	MKTFEKFDSYLLNNKVLTANEKVVYLICRSFKNAPQGCRVSHKYLMVRTGIKTRKTLVKCLDRLTLFGMLARKQINNGTCHYVFDKELMQQYIQHNQNKRRKIKLSKNKNNPQFNQQIDNVIHIVKKDK
Ga0209535_10079179	F090862	AGG	MTNYVDPKLVAKALARVTKSSNIHYTSAVKKIKKNRKQYYQNKTTKTLQKSLSKDRFNTYLEELYKNDND

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209535_1007917

Overview

Ecosystem & Geography

Associated Families

Sequences