NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1007807

Scaffold Ga0209535_1007807


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1007807 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6289
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (11.76%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015276Metagenome / Metatranscriptome256Y
F092022Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_100780710F092022N/ALVNPIVQEFIDFKEIQTLKLINREIQFKKFLYLVEETKQEAIKESGLSKKEFLKQVSNG
Ga0209535_100780715F015276N/AMEKVIIEYDNDVVSTYDIVTFRTYKKGKKEVLFNHVDDLINHPSVKSHKFVEPKRKRGKGDSTPSTYISKNRKLNIPMPIEIANEIVMFAKGDGAGFTKEIVDKWNQYFDFNLHSKFEKYGFTGSSRLNTIFKI

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