NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1007569

Scaffold Ga0209535_1007569


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1007569 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6401
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (95.65%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006383Metagenome374Y
F021674Metagenome218Y
F054842Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_100756918F021674GGTGGMERETYNTRLKTNPEEIPVGSLMRCKKHCRNNITIQKNGEYAILAPSIYRKGKAKYITHDALFPNGTRCIFMPVNWEVVSYAR
Ga0209535_100756919F006383GGAGGMHDKMWAVQQPGTLLRGRSSHQYGKLALVLEEAYAGPTPSNGYPPRKYVKMQWVATGERFEEMLNNAHNCFDIVSSCDTLGPEEN
Ga0209535_10075696F054842GAGGMSNKEWRKKLKVGDLVMMKTGGMAILTEVFFRFPETDPAYPHIKMIYCDDNTPGSCSAWRVEELINASR

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