Scaffold Ga0209535_1007492

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1007492
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6445
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002768	Metagenome / Metatranscriptome	531	Y
F004629	Metagenome	430	Y
F004990	Metagenome	416	Y
F005038	Metagenome / Metatranscriptome	414	Y
F008915	Metagenome / Metatranscriptome	326	Y
F011253	Metagenome	293	Y
F015660	Metagenome	253	N
F035491	Metagenome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100749211	F004629	AGGA	MIPTKLTVDELDNYFQTATYVERYMPSPLNIKNKRTEMFYIIEKLYGIGKDKDSYKNQDKPRLRIRLNSEQIQIYEFCILLLVKANDKDRDIISLRNFPYKRSFRQLKRFFMPVSHEQVRIKYYNALYELLKLYHLKGRAYFLK
Ga0209535_100749212	F011253	GAGG	LNKKLEIDKIIKNFAKNKSLPYANAITKIKKDRKGYFQAKDIKQQKKSLSTDRFQQYLKDIQENDTD
Ga0209535_100749214	F004990	AGAAG	MELDDYFDPKKPCIICKKGADLREGNKYYCVDHYALYVLGKPMSQIEKELKE
Ga0209535_100749216	F008915	GAG	VKLESNQVTLDLYEMQSAAHLGILRCLESKKHKENWGYNYKGSLNDQMAKSISGAMGEVAASKFLGIKFEYHCNVGGVPDLIFKDLRLQVRTQLPKDNNKNSLIIRPKAKPGEFYILVIDEAPKFKILGFVNSTYVLGQEQWKTTFGLDRPFCYSIPPEKLTPINLLKDSTWN
Ga0209535_10074923	F015660	N/A	MANKSKYSKELIDSIMKDLAEGISIKASLKNHSISWECFRKWLLDEKKYPSLRGKYTQAKQDGIEYSLSDAQSLINEAVQDSKFKEKTDLGSTHLIKEFISLAKWRAEKLSPKVYGKNDNLKVSGDSNSPLIVKWNG
Ga0209535_10074925	F035491	AGGAGG	MNLRTKPTWELRAIVKALTLPVSSFLNTDEDNERLEQAQIVLYERRLKNSQPIKMEVK
Ga0209535_10074927	F002768	GAG	MKNSWWKLTIEDYPNYKPNEIDLEHIAECIKQGYDQGELLQESEQDDEE
Ga0209535_10074928	F005038	GAG	MKNKDINIYNLFSETYKKRKMFSFIGFGELSLMPKVDKPIRQISNVYQFPIKQYYNQKRRVK