Scaffold Ga0209535_1007446

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1007446
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6468
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039870	Metagenome	163	Y
F049595	Metagenome / Metatranscriptome	146	N
F064194	Metagenome / Metatranscriptome	129	N
F086304	Metagenome / Metatranscriptome	111	Y
F099995	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10074463	F086304	AGGAGG	MHIAIELSRVCRTTGRDDGKIMLTGDTFTVEHSHRKWGTLERDICVVDNGNSNNGGYWVSESFEDICECISRGVT
Ga0209535_10074464	F039870	AGGAG	MPKFKVYVIVYHLIDDVEANSAEEAKELASTDYIWDDHIKDVIIDVEEVDDAYSD
Ga0209535_10074465	F099995	AGGAGG	MAFLYKGTDDWSGVKWCVRTVYWHDSYGLNDMLVYGGDYSPEEAPENPLVEFYDMDSLVANTVTGEEGHDDRIKERGQFVSRYYLDTLNGTDRATYASAPQFEDNWANGLNLHGGEERWSISGEFYTKAMKAVNADFKEWKENWMLEHEEIEDAKV
Ga0209535_10074468	F064194	GGTGG	MKSYLVEINAVVWKQIEVRAESVEAADTMAHELFNLAADGCPERYDQQTSQIWLDGKEMM
Ga0209535_10074469	F049595	AGGAGG	MEQVDYRFEDHGSIWLCQPLTGCAKDNLDEGCDAVLGTFHIRMGNALVVDPRFVNDVAKQLTDEGWVVE