Scaffold Ga0209535_1007399

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1007399
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6502
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (68.18%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005105	Metagenome / Metatranscriptome	412	Y
F008388	Metagenome	334	Y
F012166	Metagenome	283	Y
F015027	Metagenome / Metatranscriptome	258	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100739910	F005105	N/A	MARKICDRCMGNGYRRIWKDQHEKEKITIQCTKCESAGEIDEEPSYDYSGVDINKLQ
Ga0209535_100739912	F015027	AGGAGG	VTDKLYEATKKEVMSEHEEYKNADVPTEIWIERNKYLHQHIDMLTEELIKVRLDNKKLSKQIEDQIKQFRNTGGL
Ga0209535_10073995	F008388	N/A	MAKKKAMFGASNYHKRTPKKRPGRIRKKYGPGVKRPKKYKGQGH
Ga0209535_10073999	F012166	GAG	MADLANSGVFLGRKLTPEEKLWKAVLSQGVYEACSKKYNALPLTYGEMRSALEWIDIYNKDFCDVCYFAGYNPGYIYRKAKNKVNKWLPNGS