Scaffold Ga0209535_1006166

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1006166
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7250
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (13.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009889	Metagenome / Metatranscriptome	311	Y
F036974	Metagenome	169	N
F037984	Metagenome	167	Y
F042076	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10061663	F036974	N/A	MNDPFKLQFWDNFNDSLYFDYLLKREEMLNTYRITYKQYAGSDTSAPVSYAIKYLKAYNKHDAINAFNLWKGLIIKVEICD
Ga0209535_10061664	F042076	N/A	MKGEIEIFKNEDDIVEFRIHDTSFRVCIETETYWQEEAVSFNGFTDEIQYEEHEETTTFVRMDTLECTGTLYYSKQDICSELERMLNEHN
Ga0209535_10061665	F037984	N/A	MKRTETLELLIEIQEAIEHFEKRIDEAEWSNGFGIGLEYPNIRKKNTHNIIIYGMCIGRLNERFTKQLNTLK
Ga0209535_10061667	F009889	AGCAG	MRIYSLICVLTLFSCSSNYHYRKALKKGLKPIISSDTIRIATIDSIPIVRHDTLVYEKYFSSKDTIVHYENVFVPKTRLETRIEYKIHRDTIRQVTRIEVQKAKASKQPNYLLWVFLIVLVLAALQLFKKFI