Scaffold Ga0209535

Basic Information
Taxon OID	3300025120 Open in IMG/M
Scaffold ID	Ga0209535_1006139 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025120 Open in IMG/M

Scaffold ID

Ga0209535_1006139 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7268
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

7268

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	48.9699	Long. (^o)	-130.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

48.9699

Long. (^o)

-130.6666

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F008190	Metagenome / Metatranscriptome	337	Y
F017335	Metagenome / Metatranscriptome	241	Y
F018962	Metagenome / Metatranscriptome	232	Y
F056630	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10061391	F056630	N/A	MQKDNIEETLQEESNKPSHWQWIKGDNIGDVITIKNEDDKWINFDNGTRLAKDLKSEFIKQLDADIAGELLKTQASTVMTPSTTVQKISGDIPIPALDTTPSPIRVLFNKQKKNNKVKLILEFPVNIPAKSVYELMSTSFDLTEVNEQLQSFILDQLSEDEILDCLHNSVQSLIESKYKG
Ga0209535_10061393	F018962	N/A	MIKIVLEPARNGVIKKVIDDNHGGGKEHFTSTDVYELNENDKNQYSYVKRFFFDLCDDLGLEIGSKFDKNVLDINTQWGTHYEPSDKDVEFKIKRLKSELKKLEEWKNI
Ga0209535_10061394	F008190	N/A	MEEHIEFNFIYSSDALRVKSFLGNVPRSIECINYMDIFNKLTKNDFYQYEPSDAVVSSYLMRQLQNAIGRNISTTIFYVLGSLNKETVGGIQSYVESLSDKPITYKIYHSPDITVNGTAELFDDIIEFE
Ga0209535_10061395	F004606	N/A	MKTHRIFNKGQNVYCLLASHTNPNILLPVKGKILDSKWDPVNPLYQIRIVKFYDNMRFLKQHFFGMNFRHMFENRARKMILKAEDFKTANALEKRLNEKDRERFYVVIESVMCTKTKVGLSELFERVQLYMISKNLKEIRDISARPFFKGPLSIDSVREFDARYKKGWSDKFEKGKLNIDKYLNSLG
Ga0209535_10061397	F017335	N/A	MNIKSLTLKNKISDDKTGQQYFDLTAPSFKYKRELGVKALHYVTQDQVGRVDKISRLYFGSEQFLDAICIINNIFNPFSLQEGDILAIPNLQNENIVYKRPNPASRPSASLAQYVNTDVQSEIDQSRIQRLLQKAKTKKTGVKSPIPPNMLQQGQEAKTFAGGKIKLGANLPTRNSNTQT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209535_1006139

Overview

Ecosystem & Geography

Associated Families

Sequences