Scaffold Ga0209535_1005816

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1005816
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7509
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (84.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021206	Metagenome	220	Y
F049285	Metagenome	147	N
F065691	Metagenome	127	Y
F067202	Metagenome	126	Y
F070649	Metagenome	123	N
F089518	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100581614	F049285	AGGAG	MKLIKVRVNQTVEYEVSVPVQDEHNYEQVKDYLQSIDWEDEIEVSPQNYKHIAEYYDWLDWEEENV
Ga0209535_100581616	F067202	AGGAGG	MQFKDVIIGAEDMERQTVDTVAEAISEHIIELGLATPETLTGFTWRLDVRMRVDNETV
Ga0209535_100581617	F021206	N/A	MTVTLNQILAMENVLATRKIPSDIEAMAKAKRYSESKQDWIVLGDQPLHYVLRILAKEGLGDAV
Ga0209535_10058163	F070649	AGG	MQPKDKPSHIRIQYEPTQKQKKKECRLYGKEFINMAEAARYWNISYAWATEQVNKGWNRDRFPPKARKDYT
Ga0209535_10058167	F065691	N/A	VARRKRIEDIPLNIYIPEPITILLIVLSFLAGFLYKKYNDKEDIADAFDEGFEKGTKDVVRALSDITGRDIQIELEREDLDR
Ga0209535_10058169	F089518	AGG	MEYVIRIKGKGGKCFAYHSTKDKSELDRLVKKYLAIKGITFEIHRRYLA