Scaffold Ga0209535

Basic Information
Taxon OID	3300025120 Open in IMG/M
Scaffold ID	Ga0209535_1005491 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025120 Open in IMG/M

Scaffold ID

Ga0209535_1005491 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7769
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (91.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7769

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (91.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	48.9699	Long. (^o)	-130.6666	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

48.9699

Long. (^o)

-130.6666

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000302	Metagenome / Metatranscriptome	1337	Y
F003357	Metagenome / Metatranscriptome	492	N
F004368	Metagenome / Metatranscriptome	441	Y
F014790	Metagenome / Metatranscriptome	260	Y
F016276	Metagenome / Metatranscriptome	248	Y
F054419	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100549111	F003357	AGGAGG	MTRNSWIVKQIYTDAKNNLGWLFKGILLAGGFIAGIKILMFFSVPKEILFPVMWIAFILVMLYKWYSMKYDWKNDDKAYDRASKKYTNKLKELK
Ga0209535_100549112	F014790	AGGAG	MDTINTKKILDFTKLTGLTERITMSHGTLYVTLHQPERCDFFHGIIRTFYKDNINTDGGVNMYAVGDEFAFDFVPQDREAPVFSDEDYSGKEDMMPSDVDKGIWSEFAEDEMFDNMDDEDESPAFPSYYEVPADVDTALDLEADAKEGR
Ga0209535_100549113	F000302	GAG	MIGTMTQDTKDRIAEMERQKIDLENQLEMLGYSGNLVRMHQIEEEIYEIEDTICKLLP
Ga0209535_10054912	F016276	N/A	MIIYGHSGQDIRRMVWRKRYRLLSIIVVIAVAVMLMGCTKAKPKLEALDRFWDTLGGKKTDLVKETK
Ga0209535_10054914	F054419	AGAAGG	MMSVGYGLGMFAVGMAVILVGGLIIYKIINKREEDNDD
Ga0209535_10054915	F004368	GGAGG	MTGTRLLDIVMDRNEDFLYEDSRAMKLTPYVMSERCIQAEVVKIFKDKEEGTYDTLTYILEGGFKGFHNMDSSELIEEYKQIEEQWYNLYECSELPFTPYEEDPINHMEKVI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209535_1005491

Overview

Ecosystem & Geography

Associated Families

Sequences