Scaffold Ga0209535_1005455

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1005455
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7789
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (65.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000497	Metagenome	1075	Y
F011527	Metagenome	290	Y
F018451	Metagenome	235	Y
F026714	Metagenome	197	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10054551	F000497	N/A	MKNITKSIENKEAIIENKVALSFREKLSTRILFRLFNTKRNKSKSFNIYEKAKFSTNIKDVFNNSYRKIDIDYDTTINNRFKKANLLIDINSYLDKSKKNLYLDLINSNKEFIKTNKVSNEILENIKYFENKVNSL
Ga0209535_100545517	F011527	N/A	MLVYFQFWRCGYYAKGLVEADSLDAASKALWAEHVGTFKWEDQTKDQPETANYLTIEEYKYERSSDGKTEPKNEARGQVG
Ga0209535_10054556	F018451	GAG	MAVSKFIDVESHNPKAVMPKDYKMNKIQHSPKVLEVKNGMLGFEFNGTYIVDPTLDETARFPVSAKTYYKISARDRDRMIKANIKV
Ga0209535_10054558	F026714	AGGAG	MADKYKKLTIYVSEEQEKVLKDFDVMAIRKEQFPLLHYTVGIISKRLAETSNRMITDVDPNTCDTSTLHLNSQTIE