Scaffold Ga0209535_1004942

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1004942
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8241
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (13.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009463	Metagenome / Metatranscriptome	317	Y
F012129	Metagenome / Metatranscriptome	283	Y
F013249	Metagenome / Metatranscriptome	273	Y
F034246	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100494210	F034246	N/A	MKQGIVIQGPTEYYKELTDYYSQFNNVIWATWNDESVVRLDYIRNKGIEVILVDKPKLSGYMNVNMQVKSSFAGINYLEDKVDEILKVRSDTIVTNLDKLLFRLQGKQLSFIATCKTGVRKDLAYDLVYYHDSHDYPADNVVYGKIEDLKLMFDFQIDEVIPVPPEALIAWNYMTNKGIEFKLDYQTMVDGGISFFLQECLDENVEVNWLKKEVNLIDWYKAKEVYDW
Ga0209535_10049423	F012129	N/A	MPDPLSNLKESLDQLLQADTSIKRKNKKIYDQKKELFINLITQFEQSITRSYLMEKDFKVDLSKYEESFYQVIDSLILLAFGKQIYEILSFYFYDRYNPDGTKNSIVIQETEEEIELDNVEDLWNIIISINPNIFNEKG
Ga0209535_10049424	F013249	N/A	MGKRKLLNLKVIGHSPKLLNEFINDNKSNIFKETFSGIKHAIRQNKNIAEICSVNTDVAVATIAKKDWESALSSSLGYFESNDEYEMCGDINYTLKLLRNARSTKQPKGIS
Ga0209535_10049425	F009463	N/A	MEKVKLTDILEGDYSKDINYTDDTAMYDPLHEDGDDQQGMLKYTTNIDGRKYKVSFDVNKNPTKKGIKVKFFPLDDSGTEIPNPSPEQLGQLQNDVATKLAPKFNDFRLEFDEDEDAPEKNVAAFQVPLSSFVSFVANVVFKK