Scaffold Ga0209535_1004781

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1004781
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8406
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (18.18%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035780	Metagenome / Metatranscriptome	171	Y
F045679	Metagenome / Metatranscriptome	152	Y
F046977	Metagenome / Metatranscriptome	150	Y
F054413	Metagenome / Metatranscriptome	140	N
F059863	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100478112	F054413	N/A	MLKKKYHRKKNDLINSLNNIERQTIVLSIEVIETSKIKDHLIYECDYLDNGTQKQINIIAKDITEAMQKLEPYVGKGIPDVTTNLILGSQLYQAVPLDPPV
Ga0209535_100478118	F059863	N/A	MTKTEFKVGDKVSWIKPMACVPHPEGKTDRKGVVLPVFRDKLEKGRIIGVVYNGYSIRPDWAEQYKDAMCGERYYDQTISSQDESLKSI
Ga0209535_100478119	F035780	N/A	MENTIDVKSKDEVWWATTNEYDLEVNGENLSVRIAETPKSTEFFTWNESTGWEEADTETGIMEIIYEAWSNGELE
Ga0209535_10047812	F046977	N/A	MVKTLTKYKVELNGDLLMIKDLQGNLLKGMAVKGFNAVDRFNEMVEKVKEVESKNQSK
Ga0209535_100478121	F045679	N/A	MAKVKTITLNGKASEYDVQFTKAYVAKIISAQSDLYQELVPGELPYNAIKEIYVDGFLNAELVGSSLLYVKEKRRDITTHGVLYTKGTEEFDESHALDEVLNDMIESMTEEELAEFYGEIQDKPTEGIYLQSVTSPPPYWVSDTTAGDLEINYSTKNI