Scaffold Ga0209535

Basic Information
Taxon OID	3300025120 Open in IMG/M
Scaffold ID	Ga0209535_1004500 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025120 Open in IMG/M

Scaffold ID

Ga0209535_1004500 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8668
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (50.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8668

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (50.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	48.9699	Long. (^o)	-130.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

48.9699

Long. (^o)

-130.6666

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004629	Metagenome	430	Y
F005431	Metagenome / Metatranscriptome	401	Y
F008915	Metagenome / Metatranscriptome	326	Y
F011253	Metagenome	293	Y
F015660	Metagenome	253	N
F089158	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100450010	F011253	AGG	MNNRKDEIDKIIKDMVKNKSLPYANAVTKIKKDRKGYYQQKDIKLKSKSLSTDRFQQYLKAIQEEDDSN
Ga0209535_100450015	F008915	GAG	MESSNITLDLYEMQSAAHLGILRCLESKKNKESWGYNYKGSLNDQMAKSISGAMGEVAVAKFLGKKFEYHCNVGGVPDLIFKDLKLQVRTQLPKNNNSLIIRPKAKPGELYILVIDEAPNFKILGFVNSTFVLGQEQWKTNFGLDRPFCYSIPPDKLTPIELLKNGTWN
Ga0209535_10045003	F005431	AGGA	MDFDDNEKGYSAVIYIMESSKSVVVHFGGFNDLTECRYFSTHIMDDLGIEQLLNVPRGVTVH
Ga0209535_10045004	F015660	N/A	MANKTKYSKELIDLIMKDLAQGISIKNTLKTHSLSWECFRKWLLNVNKYPKLREMYSQAKSDGIEYCLSDAQNLINSAVEDARHKEKVDLGSTHLIKEFISLAKWRAEKLNAKVYGKNDANLKISGDSNSPLIVKWTS
Ga0209535_10045007	F089158	N/A	MTKIKWHGYDNYDMNCDIEELEKHGFVCSSYDNDLAPSYMNKKENIQIFFFDLESDEMKAEERNFKYSLMKLDEHGEYLNDIGQTNSFDQMIKLVKKNEVKNENI
Ga0209535_10045009	F004629	AGGAGG	MIPTRITVDELDNMFQTATYVERYLPSPSMKNKRTEMFSLIDRLYGIGKDKDTYKDDDKPRLRIRLNSGQLQTYEFCILLLVKATEKDRDIIALRNFPNRKSFRELKKFFLPSSHEKVRSDYYKALLDLSMVYNTKGYKYISK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209535_1004500

Overview

Ecosystem & Geography

Associated Families

Sequences