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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025120 Open in IMG/M |
| Scaffold ID | Ga0209535_1004470 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-28 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8699 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (75.00%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 48.9699 | Long. (o) | -130.6666 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001839 | Metagenome | 628 | Y |
| F021402 | Metagenome | 219 | N |
| F023243 | Metagenome | 211 | N |
| F030882 | Metagenome | 184 | N |
| F048644 | Metagenome | 148 | N |
| F072753 | Metagenome | 121 | N |
| F081764 | Metagenome | 114 | N |
| F090862 | Metagenome | 108 | N |
| F092717 | Metagenome | 107 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209535_10044701 | F021402 | AGGAG | MLTTNLTIDELDRFLQISSFCDSKMPKVKAKTLPTMYKVFENSIGIGDDADSIKYSDKHIARLKITLTSRQITIYDFILILMLDVAAKDRELLYLRNFPQRKSLRQMKRMYLDWSHTKIGYEYNKALISVCKIANKNLKKYLTS |
| Ga0209535_100447010 | F030882 | GGA | MDFKGLIDHYQTLPKSELIEKLVFKNAKLLTQENVIEKLEDEQKRLQEINQGHQKLNGELMQEIKQLKQGDK |
| Ga0209535_100447012 | F092717 | N/A | MADFNNTISLWKRKPRENDVAGKAYPHYTGKVNVDGVVKELSVWIQTEKKNPNSADMSGNVQEPYKKPENNTEEIPY |
| Ga0209535_100447014 | F072753 | AGGA | MSSNGHIYLSKIKYDCLDFISNFIKQNKFSPTYKEIGEHFQFSRARAGAICAELFKLGLISKGKAAHRKIRMTEKQTTQIPTLNFNKEYSTMDLRR |
| Ga0209535_100447018 | F048644 | N/A | MPENLELKEIFIYFVINKKSKKIVYIGESQNGRSRVQLRRFDERVCDVKVITSKKIKCLKNFYFRRYYEARWIYKFKPEYNKQINTPPNLNTFLMKMYLWNENPQADWIVPFSQNCPFKCKFLSHIQKQNKYIYNDYSKVWNEINLDKQLFINGNKAFDYILNNKIEKTLGTKTRKTFRKRTEKLHN |
| Ga0209535_10044702 | F090862 | AGGA | LTNYVDPKLVAKALARVTKSTNIHYTSAVEKIKKNRKQYYQNKQTKTLQKSLSKDRFNTYLEELYKADVDD |
| Ga0209535_10044703 | F001839 | N/A | LKTFEKFYSELLNNQVLTANEKVIYVICKSFANAPRGCRISHQYLMARTGIKTRKSLIKALDRLTLFGMLARKQIDNSTCHYVFDKETMQQYIQHNQNKRRKISLSKKKSNPQINQQNTNVIHMVKKEK |
| Ga0209535_10044706 | F023243 | GAG | MNPEIELDLYEMTTAAQTGLLRVTESIKLKQKWWHGYKGTLEDKISKSISGAMAEISLCKYFGIPFEFHTNVGSQADVKYKNYKIQVRSQTPKRNNNNSLIIRPDGVKPNEIYVFVLSQAPKFIIKGFINSSAVIGKDNYLTDFNLARPKVWAVPLKILNPIMLLKDESLN |
| Ga0209535_10044709 | F081764 | AGAAG | MEKRIRKVADCYTKFGLQHTSKSTACLKHSDRFFKKILLPKETRNLNNASFQGGTLVHDVVQLFVTENYETLDDVINSDKIQKDIDSYLAFNDKDKYKFKFIVKNLKATAQNHLANLAELEQQTFKKEIEYTAWLPNVETYWLMYLDLVGTKNFGDLKNCFGSAKLSPLKNPIKAAKKKTDKPVIDNRIDDWVYSNVKVPARPYFSDVMQISLYKNSCPLPPFLSYASNCDRKLFTENNCDELKQENLDQAIKILQVYEKAWQKKLEIADGDIEKLAWLCVPDVSDIKKNTFMWENVPDEYKQKFLDVYGL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |